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https://github.com/kuhyx/WUT_Computer_Science.git
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kuhy overruled the "do not fix coursework to be better than it was submitted" rule: git history is the archive, so the working tree can be clean. This lands the config and the mechanical half of the cleanup -- 9,281 ruff findings under the fleet config down to 3,686, with no per-file-ignores anywhere. What is in here: - pyproject.toml, the first one in this repo. select = ["ALL"], mypy strict, and the vendored list mirrored into ruff exclude and coverage omit. Five rules are off and each says why; CPY001 is the only judgement call, because stamping a copyright header onto 137 university assignments would assert a licence that was never claimed. No hook is wired up yet -- a gate lands only once its subject is clean. - ruff format + the safe fixes, then a second pass over the docstring rules ruff marks unsafe (they only edit docstring text). 108 files. - TRAK/sightpy is vendored, not coursework: it is rafael-fuente/Python-Raytracer (BSD 3-Clause). Verified against a fresh upstream clone with line endings normalised -- 30 of 32 files byte-identical, ray.py and scene.py carrying a 12- and 13-line local patch that counts rays for the report. 35 files that should never have been linted, now excluded and restored. - WDWR, SPD, MOM and ECRYPT are fully clean, by hand and verified by running them: WDWR's three plot scripts print the same statistics as before, MOM's PuLP model solves to the same cost. WDWR's graph.py had a 342-character CSV header embedded as a string literal, which cannot be wrapped -- the data moved to data/pareto_front.csv. Two 0-byte .py stubs are deleted; an empty file is not a deliverable and git still has it. Three harness bugs found by actually running things: - `run` now forces MPLBACKEND=Agg. TRAK finished its ray trace in 37 seconds and then sat for 45 minutes: plt.show() had opened an image viewer and was waiting for someone to close the window. - TRAK's main.py only pops that viewer with --show now, and its runner writes to a gitignored build/ via the new --entry-args. The default output path is outputs/output.png, which is TRACKED -- a plain run overwrote a submitted deliverable. - course_lib.sh was 357 lines, over this repo's own cap. Split into course_probe.sh and course_run.sh. Verified: ECOTE 26 tests pass, ECRYPT_PROJECT 99 pass, TRAK renders cornell_box in 37s and exits 0, every module compiles, and every import ruff removed was checked to be genuinely unused. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_0172dj34FDpao6wsix8ZuCzE
358 lines
12 KiB
Python
358 lines
12 KiB
Python
"""Program that optimizes Rastrigin function: file_ (x_point_value, y_point_value) =
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20 + (x_point_value^2 - 10cos(2πx)) + (y_point_value^2 - 10 cos(2πy)).
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Using Evolutionary Strategy (μ, λ).
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"""
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import os
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import sys
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import tempfile
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import time
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import cv2
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import matplotlib.pyplot as plt
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import numpy as np
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def rastrigin(x_argument, y_argument):
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"""Define the Rastrigin function."""
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return (
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20
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+ x_argument**2
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- 10 * np.cos(2 * np.pi * x_argument)
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+ y_argument**2
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- 10 * np.cos(2 * np.pi * y_argument)
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)
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def generate(population, arguments):
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"""Run single generation."""
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# Evaluate the fitness of each individual
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fitness = np.array(
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[
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rastrigin(x_point_value, y_point_value)
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for x_point_value, y_point_value in population
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]
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)
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# Select the top arguments["number_of_parents"] individuals
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parents = population[np.argsort(fitness)[: arguments["number_of_parents"]]]
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# Generate the next generation of lambda individuals by recombination
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children = np.concatenate(
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[
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np.random.permutation(parents)
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for i in range(
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(arguments["size_of_population"] // arguments["number_of_parents"]) + 1
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)
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]
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)
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children = children[: arguments["size_of_population"]]
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# Add mutation to the children
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mutation = np.random.normal(
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loc=0,
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scale=arguments["mutation_strength"],
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size=(arguments["size_of_population"], 2),
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)
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population = children + mutation
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return fitness, population
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def evolution_strategy(
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arguments,
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no_display=False,
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):
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"""Define the Evolutionary Strategy (μ, λ) algorithm."""
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# Initialize the population
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print_info = []
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population = np.random.uniform(
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low=arguments["min"],
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high=arguments["max"],
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size=(arguments["size_of_population"], 2),
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)
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summary = []
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if not no_display:
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print_info.append(
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(
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population,
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0,
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f"""0:nop-{arguments["number_of_parents"]}:sop-{arguments["size_of_population"]}:
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ms-{arguments["mutation_strength"]}:nog-{arguments["number_of_generations"]}:
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min-max-{arguments["min"], arguments["max"]}:noo-{arguments["number_of_outputs"]}""",
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)
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)
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arguments["number_of_outputs"] = min(
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[arguments["number_of_outputs"] - 1, arguments["number_of_generations"]]
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)
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# Iterate until we reach max number of generate and terminate
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for generation_number in range(1, arguments["number_of_generations"] + 1):
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fitness, population = generate(population, arguments)
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step = (
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arguments["number_of_generations"] // arguments["number_of_outputs"]
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if arguments["number_of_generations"] % arguments["number_of_outputs"] == 0
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else arguments["number_of_generations"]
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// (arguments["number_of_outputs"] - 1)
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)
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offset = arguments["number_of_generations"] % step
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if (generation_number - offset) % step == 0 and not no_display:
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print_info.append(
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(
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population,
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generation_number,
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f"""{generation_number}:nop_{arguments["number_of_parents"]}:
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sop_{arguments["size_of_population"]}:ms_{arguments["mutation_strength"]}:
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nog_{arguments["number_of_generations"]}:
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min_max_{arguments["min"], arguments["max"]}:
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noo_{arguments["number_of_outputs"]}""",
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)
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)
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summary.append(population)
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# Evaluate the fitness of the final population
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fitness = np.array(
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[
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rastrigin(x_point_value, y_point_value)
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for x_point_value, y_point_value in population
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]
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)
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# Return the best individual found
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best_idx = np.argmin(fitness)
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return (
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population[best_idx],
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fitness[best_idx],
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population,
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print_info,
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summary,
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)
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def print_help():
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"""Print program functionality and how to access it."""
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print(
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"""
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python main.py - Default functionality optimizing
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Rastrigin function file_ (x_point_value, y_point_value) =
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20 + (x_point_value^2 - 10cos(2πx)) + (y_point_value^2 - 10 cos(2πy))
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using Evolutionary Strategy (μ, λ), using only default values
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Default values:
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arguments["number_of_parents"]=5,
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arguments["size_of_population"]=20,
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arguments["mutation_strength"]=0.1,
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arguments["number_of_generations"]=100,
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min_value=-5.12,
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max_value=5.12
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arguments["number_of_outputs"] = 100
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python main.py -h --help print this prompt
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Any of the default values an be changed using arguments:
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-nop --arguments["number_of_parents"] [number]
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-sop --arguments["size_of_population"] [number]
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-ms --arguments["mutation_strength"] [number]
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-nog --arguments["number_of_generations"] [number]
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-min --min_value [number]
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-max --max_value [number]
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-noo, --arguments["number_of_outputs"] [number]
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Those arguments can be given in any order and any argument
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which was not entered will be replaced with default value,
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Additional flags:
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-nd, --no-display (does not show the plots)
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-s, --save (if issued WILL save the files)
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exemplary use:
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python main.py -nop 5 -sop 20 -ms 0.1 -nog 100 -min -5.12 -max 5.12 -noo 100
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"""
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)
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def get_output_bounds(x_data, y_data):
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"""Get x and y output limits for pyplot."""
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# min_size = 0.2
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min_output_size = ARGUMENTS["mutation_strength"] * 10
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xmin = min(x_data)
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xmax = max(x_data)
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ymin = min(y_data)
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ymax = max(y_data)
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x_diff = xmax - xmin
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y_diff = ymax - ymin
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if min_output_size is None:
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min_output_size = max(x_diff, y_diff)
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margin = max(x_diff, y_diff) / 5
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if x_diff < min_output_size:
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xmax += (min_output_size - x_diff) / 2
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xmin -= (min_output_size - x_diff) / 2
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if y_diff < min_output_size:
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ymax += (min_output_size - y_diff) / 2
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ymin -= (min_output_size - y_diff) / 2
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x_bounds = [xmin - margin, xmax + margin]
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y_bounds = [ymin - margin, ymax + margin]
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return x_bounds, y_bounds
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def output(population_output, generation_number, file_name="temp", save_results=False):
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"""Draw result of our function."""
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# define the visualization params
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colors = np.random.rand(len(population_output))
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with tempfile.NamedTemporaryFile(suffix=".png", delete=False) as file_:
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# iterate over the optimization steps
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x_data = []
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y_data = []
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for x_point_value, y_point_value in population_output:
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x_data.append(x_point_value)
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y_data.append(y_point_value)
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x_lim, y_lim = get_output_bounds(x_data, y_data)
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# plot the data
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plt.cla()
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plt.figure()
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plt.scatter(x_data, y_data, c=colors, alpha=0.5)
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plt.xlim(x_lim)
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plt.ylim(y_lim)
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plt.savefig(file_.name)
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# read image
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image = cv2.imread(file_.name)
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# show the image, provide window name first
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cv2.imshow(f"Generation {generation_number}", image)
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if save_results:
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cv2.imwrite(file_name + ".jpg", image)
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# add wait key. window waits until user presses a key and quits if
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# the key is 'q'
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if cv2.waitKey(0) == 113:
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# and finally destroy/close all open windows
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sys.exit()
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cv2.destroyAllWindows()
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file_.close()
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os.unlink(file_.name)
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def print_summary(populations, file_name="temp_summary", save_results=False):
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"""Draw result of our function for chosen generations."""
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with tempfile.NamedTemporaryFile(suffix=".png", delete=False) as file_:
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# iterate over the optimization steps
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# generate random 2D data - replace it with the results from your
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# algorithm
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plt.cla()
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plt.figure()
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bounds = None
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for ind, pop in enumerate(populations):
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x_data = []
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y_data = []
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for x_point_value, y_point_value in pop:
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x_data.append(x_point_value)
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y_data.append(y_point_value)
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if ind == 0:
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bounds = get_output_bounds(x_data, y_data)
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# plot the data
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transparency = ind / (len(populations) - 1)
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color = [[transparency, 0, 0]] * len(pop)
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plt.scatter(x_data, y_data, c=color, alpha=transparency, label=f"{ind}")
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plt.xlim(bounds[0])
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plt.ylim(bounds[1])
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plt.savefig(file_.name)
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# read image
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image = cv2.imread(file_.name)
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if save_results:
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cv2.imwrite("SUMMARY:" + file_name + ".jpg", image)
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# show the image, provide window name first
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cv2.imshow("Summary", image)
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# add wait key. window waits until user presses a key and quits if
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# the key is 'q'
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if cv2.waitKey(0) == 113:
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# and finally destroy/close all open windows
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sys.exit()
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cv2.destroyAllWindows()
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file_.close()
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os.unlink(file_.name)
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def user_input():
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"""Handle user terminal arguments."""
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arguments = {
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"number_of_parents": 5,
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"size_of_population": 20,
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"mutation_strength": 0.1,
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"number_of_generations": 100,
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"min": -5.12,
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"max": 5.12,
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"number_of_outputs": 10,
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"no_display": False,
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"save": False,
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}
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for index, argument in enumerate(sys.argv):
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if argument in ("-h", "--help"):
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print_help()
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sys.exit()
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if argument in ("-nop", "--number_of_parents"):
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arguments["number_of_parents"] = int(sys.argv[index + 1])
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if argument in ("-sop", "--size_of_population"):
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arguments["size_of_population"] = int(sys.argv[index + 1])
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if argument in ("-ms", "--mutation_strength"):
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arguments["mutation_strength"] = float(sys.argv[index + 1])
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if argument in ("-nog", "--number_of_generations"):
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arguments["number_of_generations"] = int(sys.argv[index + 1])
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if argument in ("-min", "--min_value"):
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arguments["min"] = float(sys.argv[index + 1])
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if argument in ("-max", "--max_value"):
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arguments["max"] = float(sys.argv[index + 1])
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if argument in ("-noo", "--number_of_outputs"):
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arguments["number_of_outputs"] = int(sys.argv[index + 1])
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if argument in ("-nd", "--no_display"):
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arguments["no_display"] = True
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if argument in ("-s", "--save"):
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arguments["save"] = True
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return arguments
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def print_output(print_info, save_results, summary):
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"""Prints out population and summary plots."""
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for population, generation_number, file_name in print_info:
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output(population, generation_number, file_name, save_results)
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summary_file_name = file_name
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print_summary(summary, summary_file_name, save_results)
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# Ran first in the code
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if __name__ == "__main__":
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# Run the Evolutionary Strategy algorithm
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ARGUMENTS = user_input()
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TOTAL_TIME = 0
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start_time = time.perf_counter()
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(
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best_individual,
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best_fitness,
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output_population,
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PRINT_INFO,
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SUMMARY,
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) = evolution_strategy(
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ARGUMENTS,
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ARGUMENTS["no_display"],
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)
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end_time = time.perf_counter()
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if not ARGUMENTS["no_display"]:
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print_output(PRINT_INFO, ARGUMENTS["save"], SUMMARY)
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TOTAL_TIME = end_time - start_time
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time_per_generation = TOTAL_TIME / ARGUMENTS["number_of_generations"]
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print("Best individual found:", best_individual)
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print("Best fitness found:", best_fitness)
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print("total_generation_time: ", TOTAL_TIME)
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print("time_per_generation: ", time_per_generation)
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