WUT_Computer_Science/Programming/NLP/processing.py
Krzysztof kuhy Rudnicki bd24dd57ea Hold the coursework to the same lint bar as the tooling
kuhy overruled the "do not fix coursework to be better than it was submitted"
rule: git history is the archive, so the working tree can be clean. This lands
the config and the mechanical half of the cleanup -- 9,281 ruff findings under
the fleet config down to 3,686, with no per-file-ignores anywhere.

What is in here:

- pyproject.toml, the first one in this repo. select = ["ALL"], mypy strict,
  and the vendored list mirrored into ruff exclude and coverage omit. Five
  rules are off and each says why; CPY001 is the only judgement call, because
  stamping a copyright header onto 137 university assignments would assert a
  licence that was never claimed. No hook is wired up yet -- a gate lands only
  once its subject is clean.

- ruff format + the safe fixes, then a second pass over the docstring rules
  ruff marks unsafe (they only edit docstring text). 108 files.

- TRAK/sightpy is vendored, not coursework: it is rafael-fuente/Python-Raytracer
  (BSD 3-Clause). Verified against a fresh upstream clone with line endings
  normalised -- 30 of 32 files byte-identical, ray.py and scene.py carrying a
  12- and 13-line local patch that counts rays for the report. 35 files that
  should never have been linted, now excluded and restored.

- WDWR, SPD, MOM and ECRYPT are fully clean, by hand and verified by running
  them: WDWR's three plot scripts print the same statistics as before, MOM's
  PuLP model solves to the same cost. WDWR's graph.py had a 342-character CSV
  header embedded as a string literal, which cannot be wrapped -- the data
  moved to data/pareto_front.csv. Two 0-byte .py stubs are deleted; an empty
  file is not a deliverable and git still has it.

Three harness bugs found by actually running things:

- `run` now forces MPLBACKEND=Agg. TRAK finished its ray trace in 37 seconds
  and then sat for 45 minutes: plt.show() had opened an image viewer and was
  waiting for someone to close the window.
- TRAK's main.py only pops that viewer with --show now, and its runner writes
  to a gitignored build/ via the new --entry-args. The default output path is
  outputs/output.png, which is TRACKED -- a plain run overwrote a submitted
  deliverable.
- course_lib.sh was 357 lines, over this repo's own cap. Split into
  course_probe.sh and course_run.sh.

Verified: ECOTE 26 tests pass, ECRYPT_PROJECT 99 pass, TRAK renders
cornell_box in 37s and exits 0, every module compiles, and every import ruff
removed was checked to be genuinely unused.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_0172dj34FDpao6wsix8ZuCzE
2026-08-28 19:53:04 +02:00

147 lines
4.9 KiB
Python

import re
import numpy as np
import pandas as pd
from lxml import etree
def load_sentences(senteance1_path: str, sentance2_path: str) -> pd.DataFrame:
"""Loads the sentences from the given paths and outputs in a 2 columns dataframe."""
sentance1 = pd.read_csv(senteance1_path, dtype=str, delimiter="}", header=None)
sentance1.columns = ["sentance1"]
sentance2 = pd.read_csv(sentance2_path, dtype=str, delimiter="}", header=None)
sentance2.columns = ["sentance2"]
sentances = pd.concat([sentance1, sentance2], axis=1)
return sentances
def chunk2list(chunks: str) -> list:
"""Takes str that is all chunks from a chunked sentance and returns a list of all the chunks as seperate items."""
chunks = chunks.replace("[", "")
chunks = chunks.replace("]", "")
chunks = chunks.replace(" ", "|")
split = chunks.split("|")
split = [
re.sub(r"^\s+|\s+$", "", s) for s in split
] # remove spaces at the beggining and end of chunks
split = [re.sub(r"[^\w\s]", "", s) for s in split] # remove punctuation
return split
def load_chunked(chunked_path1: str, chunked_path2: str) -> pd.DataFrame:
"""Loads chunked sentances in [ chunk1 ] [ chunk2 ] format into dataframe with lists of chunks."""
chunked_sentance1 = pd.read_csv(
chunked_path1, dtype=str, delimiter="}", header=None
)
chunked_sentance1.columns = ["chunked_sentance1"]
chunked_sentance2 = pd.read_csv(
chunked_path2, dtype=str, delimiter="}", header=None
)
chunked_sentance2.columns = ["chunked_sentance2"]
headlines_chunked = pd.concat([chunked_sentance1, chunked_sentance2], axis=1)
# convert chunks from str to list
headlines_chunked["chunked_sentance1"] = headlines_chunked[
"chunked_sentance1"
].apply(chunk2list)
headlines_chunked["chunked_sentance2"] = headlines_chunked[
"chunked_sentance2"
].apply(chunk2list)
return headlines_chunked
def return_characteers(cell: str) -> str:
"""Converts the alignment data to restore the <==> and & tokens."""
cell = cell.replace("ARROWS_PLACEHOLDER", "<==>")
cell = cell.replace("AMPERSAND_PLACEHOLDER", "&")
return cell
def load_alignment(alignment_path: str) -> pd.DataFrame:
"""Loads the alignment file. Parses only the <alignment> tag and puts the data into a dataframe."""
with open(alignment_path) as file:
file_content = file.read()
# <==> and & break xml loaders so it needs to be replaces with something else
modified_content = file_content.replace("<==>", "ARROWS_PLACEHOLDER").replace(
"&", "AMPERSAND_PLACEHOLDER"
)
# it also needs a root wrapped to function properly
modified_content = f"<root>{modified_content}</root>"
modified_file_path = "temp.wa"
with open(modified_file_path, "w") as modified_file:
modified_file.write(modified_content)
# Parse the modified file using ElementTree
tree = etree.parse(modified_file_path)
root = tree.getroot()
# get ansewrs
alignments_data = []
for alignment in root.xpath("//alignment"):
# Extract relevant information from the alignment element
data = {
"sentence_id": alignment.xpath("ancestor::sentence/@id")[0],
"alignment_text": alignment.text,
}
alignments_data.append(data)
y = pd.DataFrame(alignments_data)
y = y.drop(columns=["sentence_id"])
y["alignment_text"] = y["alignment_text"].apply(return_characteers)
return y
def prettyprint(element, **kwargs):
xml = etree.tostring(element, pretty_print=True, **kwargs)
print(xml.decode(), end="")
def test_XML():
# test out the format
print(alignments_data[0]["alignment_text"])
def generate_train_test_split(xy: pd.DataFrame):
"""Generates a train, validate, test split of the given dataframes in a 60% 20% 20% ratio."""
# data = pd.merge(x, y, left_index=True, right_index=True)
data = xy
train, test = np.split(
data.sample(frac=1, random_state=42), [int(0.03 * len(data))]
)
return train, test
def generate_alignment_format(dataFrame: pd.DataFrame, id: int) -> str:
output = "seq1:\n"
chunks1 = dataFrame["chunked_sentance1"][id]
for i, chunk in enumerate(chunks1):
output = output + str(i + 1) + ") " + str(chunk) + "\n"
output = output + "\nseq2:\n"
chunks2 = dataFrame["chunked_sentance2"][id]
for i, chunk in enumerate(chunks2):
output = output + str(i + 1) + ") " + str(chunk) + "\n"
return output
def get_chunks_as_text(data: pd.DataFrame) -> str:
output = []
for index, row in data.iterrows():
chunks = ""
for chunk in row["chunked_sentance1"]:
chunks = chunks + "[ " + chunk + " ] "
chunks = chunks + "\n"
for chunk in row["chunked_sentance2"]:
chunks = chunks + "[ " + chunk + " ] "
output.append(chunks)
return output, data.index