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kuhy overruled the "do not fix coursework to be better than it was submitted" rule: git history is the archive, so the working tree can be clean. This lands the config and the mechanical half of the cleanup -- 9,281 ruff findings under the fleet config down to 3,686, with no per-file-ignores anywhere. What is in here: - pyproject.toml, the first one in this repo. select = ["ALL"], mypy strict, and the vendored list mirrored into ruff exclude and coverage omit. Five rules are off and each says why; CPY001 is the only judgement call, because stamping a copyright header onto 137 university assignments would assert a licence that was never claimed. No hook is wired up yet -- a gate lands only once its subject is clean. - ruff format + the safe fixes, then a second pass over the docstring rules ruff marks unsafe (they only edit docstring text). 108 files. - TRAK/sightpy is vendored, not coursework: it is rafael-fuente/Python-Raytracer (BSD 3-Clause). Verified against a fresh upstream clone with line endings normalised -- 30 of 32 files byte-identical, ray.py and scene.py carrying a 12- and 13-line local patch that counts rays for the report. 35 files that should never have been linted, now excluded and restored. - WDWR, SPD, MOM and ECRYPT are fully clean, by hand and verified by running them: WDWR's three plot scripts print the same statistics as before, MOM's PuLP model solves to the same cost. WDWR's graph.py had a 342-character CSV header embedded as a string literal, which cannot be wrapped -- the data moved to data/pareto_front.csv. Two 0-byte .py stubs are deleted; an empty file is not a deliverable and git still has it. Three harness bugs found by actually running things: - `run` now forces MPLBACKEND=Agg. TRAK finished its ray trace in 37 seconds and then sat for 45 minutes: plt.show() had opened an image viewer and was waiting for someone to close the window. - TRAK's main.py only pops that viewer with --show now, and its runner writes to a gitignored build/ via the new --entry-args. The default output path is outputs/output.png, which is TRACKED -- a plain run overwrote a submitted deliverable. - course_lib.sh was 357 lines, over this repo's own cap. Split into course_probe.sh and course_run.sh. Verified: ECOTE 26 tests pass, ECRYPT_PROJECT 99 pass, TRAK renders cornell_box in 37s and exits 0, every module compiles, and every import ruff removed was checked to be genuinely unused. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_0172dj34FDpao6wsix8ZuCzE
147 lines
4.9 KiB
Python
147 lines
4.9 KiB
Python
import re
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import numpy as np
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import pandas as pd
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from lxml import etree
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def load_sentences(senteance1_path: str, sentance2_path: str) -> pd.DataFrame:
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"""Loads the sentences from the given paths and outputs in a 2 columns dataframe."""
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sentance1 = pd.read_csv(senteance1_path, dtype=str, delimiter="}", header=None)
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sentance1.columns = ["sentance1"]
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sentance2 = pd.read_csv(sentance2_path, dtype=str, delimiter="}", header=None)
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sentance2.columns = ["sentance2"]
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sentances = pd.concat([sentance1, sentance2], axis=1)
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return sentances
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def chunk2list(chunks: str) -> list:
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"""Takes str that is all chunks from a chunked sentance and returns a list of all the chunks as seperate items."""
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chunks = chunks.replace("[", "")
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chunks = chunks.replace("]", "")
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chunks = chunks.replace(" ", "|")
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split = chunks.split("|")
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split = [
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re.sub(r"^\s+|\s+$", "", s) for s in split
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] # remove spaces at the beggining and end of chunks
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split = [re.sub(r"[^\w\s]", "", s) for s in split] # remove punctuation
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return split
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def load_chunked(chunked_path1: str, chunked_path2: str) -> pd.DataFrame:
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"""Loads chunked sentances in [ chunk1 ] [ chunk2 ] format into dataframe with lists of chunks."""
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chunked_sentance1 = pd.read_csv(
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chunked_path1, dtype=str, delimiter="}", header=None
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)
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chunked_sentance1.columns = ["chunked_sentance1"]
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chunked_sentance2 = pd.read_csv(
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chunked_path2, dtype=str, delimiter="}", header=None
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)
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chunked_sentance2.columns = ["chunked_sentance2"]
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headlines_chunked = pd.concat([chunked_sentance1, chunked_sentance2], axis=1)
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# convert chunks from str to list
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headlines_chunked["chunked_sentance1"] = headlines_chunked[
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"chunked_sentance1"
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].apply(chunk2list)
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headlines_chunked["chunked_sentance2"] = headlines_chunked[
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"chunked_sentance2"
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].apply(chunk2list)
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return headlines_chunked
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def return_characteers(cell: str) -> str:
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"""Converts the alignment data to restore the <==> and & tokens."""
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cell = cell.replace("ARROWS_PLACEHOLDER", "<==>")
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cell = cell.replace("AMPERSAND_PLACEHOLDER", "&")
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return cell
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def load_alignment(alignment_path: str) -> pd.DataFrame:
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"""Loads the alignment file. Parses only the <alignment> tag and puts the data into a dataframe."""
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with open(alignment_path) as file:
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file_content = file.read()
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# <==> and & break xml loaders so it needs to be replaces with something else
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modified_content = file_content.replace("<==>", "ARROWS_PLACEHOLDER").replace(
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"&", "AMPERSAND_PLACEHOLDER"
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)
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# it also needs a root wrapped to function properly
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modified_content = f"<root>{modified_content}</root>"
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modified_file_path = "temp.wa"
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with open(modified_file_path, "w") as modified_file:
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modified_file.write(modified_content)
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# Parse the modified file using ElementTree
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tree = etree.parse(modified_file_path)
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root = tree.getroot()
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# get ansewrs
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alignments_data = []
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for alignment in root.xpath("//alignment"):
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# Extract relevant information from the alignment element
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data = {
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"sentence_id": alignment.xpath("ancestor::sentence/@id")[0],
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"alignment_text": alignment.text,
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}
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alignments_data.append(data)
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y = pd.DataFrame(alignments_data)
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y = y.drop(columns=["sentence_id"])
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y["alignment_text"] = y["alignment_text"].apply(return_characteers)
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return y
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def prettyprint(element, **kwargs):
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xml = etree.tostring(element, pretty_print=True, **kwargs)
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print(xml.decode(), end="")
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def test_XML():
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# test out the format
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print(alignments_data[0]["alignment_text"])
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def generate_train_test_split(xy: pd.DataFrame):
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"""Generates a train, validate, test split of the given dataframes in a 60% 20% 20% ratio."""
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# data = pd.merge(x, y, left_index=True, right_index=True)
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data = xy
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train, test = np.split(
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data.sample(frac=1, random_state=42), [int(0.03 * len(data))]
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)
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return train, test
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def generate_alignment_format(dataFrame: pd.DataFrame, id: int) -> str:
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output = "seq1:\n"
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chunks1 = dataFrame["chunked_sentance1"][id]
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for i, chunk in enumerate(chunks1):
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output = output + str(i + 1) + ") " + str(chunk) + "\n"
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output = output + "\nseq2:\n"
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chunks2 = dataFrame["chunked_sentance2"][id]
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for i, chunk in enumerate(chunks2):
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output = output + str(i + 1) + ") " + str(chunk) + "\n"
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return output
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def get_chunks_as_text(data: pd.DataFrame) -> str:
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output = []
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for index, row in data.iterrows():
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chunks = ""
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for chunk in row["chunked_sentance1"]:
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chunks = chunks + "[ " + chunk + " ] "
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chunks = chunks + "\n"
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for chunk in row["chunked_sentance2"]:
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chunks = chunks + "[ " + chunk + " ] "
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output.append(chunks)
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return output, data.index
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