Two levels of pure taxonomy carrying no information, and a 2-directory
cap leaves no room for them. Categories now sit directly under
linux_configuration/: features, fixes, utils, misc, fresh-install,
installers, diagnostics, gaming, boot_recovery, periodic_background, lib,
meta, tests. A script's own lib/ and tests/ are exempt from the cap, so
those stay put.
Depth violations 248 -> 139; roughly 40 of the remainder are inside
digital_wellbeing and hosts, deferred until the guard-lib repoint.
The moves are the easy half. What breaks is every path that counted
levels, and three classes of it had to be found by resolving paths rather
than reading diffs:
- 52 relative `source` lines for lib/common.sh and lib/android.sh. The
correct prefix differs per file: 40 were ../../ and 12 were ../../../,
so a blanket replace would have fixed one set and broken the other.
- REPO_ROOT in 7 fixes/lib/tests harnesses and setup_syncyomi_guard.sh,
each walking up four levels from a directory now two levels shallower.
This caused a real regression -- the fixes suite went red with
"log_warn: command not found" -- caught by running it and comparing
against the pre-move baseline worktree.
- conftest.py's sys.path entries, which took the pytest gate down with
14 collection errors, and the `# shellcheck source=` directives, which
took shellcheck down with SC1091.
16 symlinks in $HOME broke, including the entire i3blocks bar. All
repointed, and cpu_monitor/memory/disk/time/volume were run to confirm
they emit real output rather than merely resolving.
Verified: 1798 tests pass at 100% coverage, 8 of 9 lib/tests suites pass
(the ninth needs the coverage jail, identically at baseline), pre-commit
is clean, and the two untracked secret configs are still ignored after
their gitignore paths changed.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01PJrqKERAo5QUeEHWS5Asgp
The shellcheck hook ran with --severity=warning, so info- and style-level
findings never failed a commit. 222 had accumulated across 94 of 244 shell
files. They were not all style noise -- six were bugs:
- Five scripts in single_use/misc/testsAndMisc-bash/ sourced
$SCRIPT_DIR/../../lib/common.sh, one directory too shallow. Nothing exists
at that path, so all five failed at runtime.
- setup_personal_website.sh and setup_kcd2_dice_solver.sh called usage()
(which ends in `exit 0`) and then `exit 1` for an unknown command. The
exit 1 was unreachable, so a typo'd subcommand reported SUCCESS.
- Six i3blocks scripts had a `# shellcheck source=` directive missing the
scripts/periodic_background/ path segment. The stale path had silently
disabled source-following for all of them.
- diagnose_arch_performance.sh word-split a newline-joined file list; when
the find came back empty, awk got no file operands, fell through to
reading stdin, and the diagnostic hung.
- lib/common.sh's handle_arg_help_or_unknown ended in an unreachable
`return 0` while documenting "Returns: 0 if handled" -- a contract no code
path could satisfy.
- deploy.sh's SCRIPT_DIR is reassigned by config.sh, which it sources at top
level, and config.sh can repoint it at the on-device path
/data/local/tmp/focus_mode. Renamed to DEPLOY_DIR.
The SC1091 bulk (81 findings) was resolved rather than silenced: .shellcheckrc
sets external-sources + source-path=SCRIPTDIR so sourced files are actually
followed and analysed. That is what surfaced the i3blocks and deploy.sh bugs.
17 `# shellcheck disable=` directives remain, each with a written reason, and
only where the finding is provably wrong: injection-test payloads that must not
expand, literal source text being grepped for, POSIX sh scripts on the phone
where arrays do not exist, and source paths that only exist at runtime.
Everything else was fixed in code.
Verified in a CLEAN worktree, not just my own tree. config.sh sources the
gitignored config_secrets.sh, which exists locally but not in a fresh checkout;
a working-tree-only check passed while ci_mirror.sh -- which lints HEAD in a
clean worktree, exactly as CI does -- failed on it.
The gate is verified to bite: a file whose only finding is SC2016 (info) fails
the hook, while the old --severity=warning gate exits 0 on it.
third_party/ is excluded -- vendored upstream, matching the prettier hook.
Not fixed, reported: check_polling_antipatterns.sh carries a pre-existing
SC2034 disable that hides a real bug -- its `patterns` array is never used, so
the checker detects nothing. Confirmed unchanged by this commit.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
atop's `-P PRC` output inserts the clock-tick rate (HZ=100) between the
`state` and `utime` columns. Both the Python parser and the native C
aggregator read that constant as utime for every record, charging a flat
1 CPU-second per record — so cpu_seconds collapsed to pid_count and
short-lived fork-storm commands (xset, dd, chronyc) topped the CPU table
(xset showed 67h). The old test fixtures lacked the HZ field, so code and
tests agreed on the bug.
- _parse_prc / atop_agg.c: read utime/stime past the HZ field (after+2/+3,
tokens[10]/[11]); bump the length guards accordingly
- restore C/atop_agg (deleted in 89b4f59) under linux_configuration/C/,
where the build path resolves; corrected test fixtures to include HZ
- _atop_agg_binary: fall back to the Python parser when the C source tree
is gone instead of trusting an orphaned cached binary
- add regression tests proving HZ is not summed as CPU
- bundle the in-progress since-last-report multi-day aggregation (segments,
-b/-e bounding, persisted state, window merging) and its tests/conftest
- meta: gate linux_configuration/tests in pytest_changed_packages.py
Verified by running usage_report.py --date 20260604: Top CPU now led by
SkyrimSE; xset/dd/chronyc fall to ~0. C unit tests + full pytest suite green.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
- Move pyproject.toml, .pre-commit-config.yaml, requirements.txt, run.sh,
lint_python.sh, .fvmrc into meta/ with root symlinks preserving tool
auto-discovery.
- Combine requirements.txt + requirements-dev.txt into meta/requirements.txt
(single sorted source of truth).
- Remove setup.sh, .binary-allowlist, C/ (no native code remains),
python_pkg/{split,pdfCentered,geo_data}, scripts/check_c_cpp_build_files.sh.
- Drop clang-format/cppcheck/flawfinder/check-c-cpp-build-files hooks and
archived path excludes from pre-commit config.
- Add .secret-patterns to .gitignore and untrack it (sensitive content;
full history purge is a follow-up step).
